Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKLLVSLLLTLGLTGLAHAAGDAAAGQAKA-AVCGACHGADGNSP-APNFPKLAGQGERYLLKQMHDIKDGKRT----VLEMTGLLTNLSDQDLADIAAYFASQKMSVGM--ADPNLVAQGEALFRGGKIAEGMPACTGCHSPSGVGIATAGFPHLGGQHATYVAKQLTDFREGTRTNDGDTKIMQSIAAKLSNKDIAAISSYIQGLH
1H1O Chain:A ((12-183))
------------------------------VSSDCMVCHGMTGRDTLYPIVPRLAGQHKSYMEAQLKAYKDHSRADQNGEIYMWPVAQALDSAKITALADYFNAQKPPMQSSGIKHAGAKEGKAIFNQGVTNEQIPACMECHGSDGQGAG--PFPRLAGQRYGYIIQQLTYFHNGTR---V-NTLMNQIAKNITVAQMKDVAAYLSSL-
General information:
TITO was launched using:
RESULT:
Template:
1H1O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44639 for 1263 contacts (-35.3/contact) +
2D Compatibility (PS) -17815 + (NN) -9110 + (LL) 2400
1D Compatibility (HY) -10400 + (ID) 2650
Total energy: -82214.0 ( -65.09 by residue)
QMean score : 0.361
(partial model without unconserved sides chains):
PDB file :
Tito_1H1O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1H1O-query.scw
PDB file :
Tito_Scwrl_1H1O.pdb
: