Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNRDFRVRDQLETFGVRVSALIIENQKLLLIYAP---HLDKYYLPGGALQVGEDSNKAVAREVLEEIGLHSQVGDLAYIVENQFNIKRHHYHSVEFLYFVNLLGQAPESIKEGTHKRHFVWLPIKELTKIDCN--PNFLAQDLIEWPGHVVHKIVQN
2B0V Chain:A ((6-138))
-------------KPNVTVAAVIEQDDKYLLVEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPEVLTGIYHWTCAS--NGTTYLRFTFSGQVVSF-DPDRKLDTGIVRAAWFSIDEIRAKQAMHRTPLVMQCIEDYHAGKRYPLDIL
General information:
TITO was launched using:
RESULT:
Template:
2B0V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63285 for 913 contacts (-69.3/contact) +
2D Compatibility (PS) -14152 + (NN) -2877 + (LL) 1372
1D Compatibility (HY) -3200 + (ID) 1500
Total energy: -83642.0 ( -91.61 by residue)
QMean score : 0.451
(partial model without unconserved sides chains):
PDB file :
Tito_2B0V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2B0V-query.scw
PDB file :
Tito_Scwrl_2B0V.pdb
: