Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKQDYISYIRSKVGHETIFLTYSGGILTDGKGRVLLQLRAD--KNSWGIIGGCMELGESSVDTLKREFFEETGLRVEPIRLLNVYTNFQDSYPNGDKAQTVGFIYEVSCPKPVNIEGFHNEETLQLDYFSKEDVKNITIVN--EQHQLILDEYFSQTFQMGR
1VK6 Chain:A ((137-266))
----------------PQIAPCIIVAIRR-DDSILLAQHTRHRNGVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWP--------FPQSLMTAFMAEYDSG-DIVI-DPKELLEANWYRYDDLPL--LPPPGTVARRLIEDTVAMCRAEY-
General information:
TITO was launched using:
RESULT:
Template:
1VK6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47860 for 921 contacts (-52.0/contact) +
2D Compatibility (PS) -13722 + (NN) -6718 + (LL) 1440
1D Compatibility (HY) -5600 + (ID) 900
Total energy: -73360.0 ( -79.65 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_1VK6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VK6-query.scw
PDB file :
Tito_Scwrl_1VK6.pdb
: