Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLVLAVLLTVAAADSGISPRAVWQFRKMIKCVIPGSDPFLEYNNYGCYCGLGGSGTPVDELDKCCQTHDNCYDQAKKLDSCKFLLDNPYTHTYSYSCSGSAITCSSKNKECEAFICNCDRNAAICFSKAPYNKAHKNLDTKKYCQS
5P2P Chain:A ((1-119))
----------------------ALFQFRSMIKCAIPGSHPLMDFNNYGCYCGWGGSGTPVDELDRCCETHDNCYRDAKNLSGCY-----PYTESYSYSCSNTEITCNSKNNACEAFICNCDRNAAICFSKAPYNKEHKNLDTKKYC--
General information:
TITO was launched using:
RESULT:
Template:
5P2P.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64238 for 865 contacts (-74.3/contact) +
2D Compatibility (PS) -12555 + (NN) -6649 + (LL) 2636
1D Compatibility (HY) -16000 + (ID) 4600
Total energy: -101406.0 ( -117.23 by residue)
QMean score : 0.402
(partial model without unconserved sides chains):
PDB file :
Tito_5P2P.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5P2P-query.scw
PDB file :
Tito_Scwrl_5P2P.pdb
: