Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPPEPKKSRRCVLL
2C2H Chain:A ((3-177))
--AIKCVVVGDGAVGKTCLLISYTTNAFPG-------DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVL--------------
General information:
TITO was launched using:
RESULT:
Template:
2C2H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -136594 for 1366 contacts (-100.0/contact) +
2D Compatibility (PS) -18116 + (NN) -8553 + (LL) 1640
1D Compatibility (HY) -22800 + (ID) 6000
Total energy: -190423.0 ( -139.40 by residue)
QMean score : 0.698
(partial model without unconserved sides chains):
PDB file :
Tito_2C2H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2C2H-query.scw
PDB file :
Tito_Scwrl_2C2H.pdb
: