Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VRSLNSIVAVCQNMGIGKDGNLPWPPLRNEYKYFQRMTSTSHVEGKQNAVIMGKKTWFSIPEKNRPLKDRINIVLSRELKEAPKGAHYLSKSLDDALALLDSPELKSKVDMVWIVGGTAVYKAAMEKPINHRLFVTRILHEFESDTFFPEIDYKDFKLLTEYPGVPADIQEEDGIQYKFEVYQKSVLAQ
1KMV Chain:A ((1-185))
VGSLNCIVAVSQNMGIGKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPEKNRPLKGRINLVLSRELKEPPQGAHFLSRSLDDALKLTEQPELANKVDMVWIVGGSSVYKEAMNHPGHLKLFVTRIMQDFESDTFFPEIDLEKYKLLPEYPGVLSDVQEEKGIKYKFEVYEKN----
General information:
TITO was launched using:
RESULT:
Template:
1KMV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120772 for 1392 contacts (-86.8/contact) +
2D Compatibility (PS) -20184 + (NN) -9502 + (LL) 632
1D Compatibility (HY) -24000 + (ID) 6950
Total energy: -180776.0 ( -129.87 by residue)
QMean score : 0.782
(partial model without unconserved sides chains):
PDB file :
Tito_1KMV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KMV-query.scw
PDB file :
Tito_Scwrl_1KMV.pdb
: