Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLEQPYLDLAKKVLDEGHFKPDRTHTGTYSIFGHQMRFDLSKGFPLLTTKKVPFGLIKSELLWFLHGDTNIRFLLQHRNHIWDEWAFEKWVKSDEYHGPDMTDFGHRSQKDPEFAAVYHEEMAKFDDRVLHDDAFAAKYGDLGLVYGSQWRAWH--T------------------------SKG--------DTIDQLGDVIEQIKTHPYSRRLIVSAWNPEDVPTMALPPCHTLYQF--YVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECGLEVGEFIHTFGDAHLYVNHLDQIKEQLSRTPRPAPTLQLNPDKHDIFDF--------DM---KDIKLLNYDPYPAIKAPVAV |
| 3V8H Chain:A ((5-318)) | --MKQYLDLVRTILDTGTWQSN--GIRTIGIPGAMLRFDLQQGFPAVTTKKLAFKSAIGELVGFLRATRSAAEFRALGCKVWDANANENAQWLA--------------------------------------NPYRRGADDLGDVYGVQWRRWPGYKVLDAHADAQIADATSRGFRIVARFEEGGADKVLLHKAIDQLRDCLDTIVRDPSSRRILFHGWNPAVLDEIALPACHLLYQFLPNVERREISLCLYIRSNDVGLGTPFNLAEGAALLTLVGRLTGYSPRWFTYFIGDAHIYENQLDMLKQQLEREPFESPRLELAERVPDYAKTGKYEPQWLERVEPSDFTLVGYRHH--------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3V8H.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -144679 for 2046 contacts (-70.7/contact) +
2D Compatibility (PS) -28120 + (NN) -10642 + (LL) 3312
1D Compatibility (HY) -17200 + (ID) 5150
Total energy: -202479.0 ( -98.96 by residue)
QMean score : 0.565
|
|
|