Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MATPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQDEFEELTMSQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDKYESLVEKVKEFLSTL |
| 2VP4 Chain:A ((18-209)) | ------------------TQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNV---------------NGVNLLELMYKDPKKWAMPFQSYVTLTMLQSHTAPTN-------KKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYKFIEESIH--VQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQR------RPQSCKVLVLDADL-------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2VP4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -95876 for 1494 contacts (-64.2/contact) +
2D Compatibility (PS) -20146 + (NN) -5205 + (LL) 3840
1D Compatibility (HY) -16000 + (ID) 3450
Total energy: -136837.0 ( -91.59 by residue)
QMean score : 0.440
|
|
|