Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MATPPKRFCPSPSTSSEGTRIKKISIEGNIAAGKSTFVNILKQASEDWEVVPEPVARWCNVQSTQEEFEELTTSQKSGGNVLQMMYEKPERWSFTFQSYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESDCMNETEWTIYQDWHDWMNSQFGQSLELDGIIYLRATPEKCLNRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTSFDYLQEVPVLTLDVNEDFKDKHESLVEKVKEFLSTL |
| 2VP4 Chain:A ((18-209)) | ------------------TQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVN---------------GVNLLELMYKDPKKWAMPFQSYVTLTMLQSHTAPT-------NKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYKFIEESIH--VQADLIIYLRTSPEVAYERIRQRARSEESCVPLKYLQELHELHEDWLIHQR------RPQSCKVLVLDADL-------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VP4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -86399 for 1494 contacts (-57.8/contact) +
2D Compatibility (PS) -20173 + (NN) -5542 + (LL) 3332
1D Compatibility (HY) -16000 + (ID) 3500
Total energy: -128282.0 ( -85.86 by residue)
QMean score : 0.446
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