Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKKSVRHIKIREIISNEQIETQDELVKRLNDYDLNVTQATVSRDIKELQLIKVPIPSGQ-YVYSLPNDRKFHP-----LEKLGRYLMDSFVNIDGTDNLLVLKTLPGNAQSIGAILDQINWEEVLGTICGDDTCLIICRSKEASDEIKSRIFNLL
3LAP Chain:A ((16-169))
-ANRAGRQARIVAILSSAQVRSQNELAALLAAEGIEVTQATLSRDLEELGAVKLRGADGGTGIYVVPE------GVSGGTDRMARLLGELLVSTDDSGNLAVLRTPPGAAHYLASAIDRAALPQVVGTIAGDDTILVVAREPTTGAQLAGMFENL-
General information:
TITO was launched using:
RESULT:
Template:
3LAP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84199 for 1004 contacts (-83.9/contact) +
2D Compatibility (PS) -15406 + (NN) -6848 + (LL) 508
1D Compatibility (HY) -8000 + (ID) 2400
Total energy: -116345.0 ( -115.88 by residue)
QMean score : 0.471
(partial model without unconserved sides chains):
PDB file :
Tito_3LAP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LAP-query.scw
PDB file :
Tito_Scwrl_3LAP.pdb
: