Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKLITTVKEMQHIVKAAKRSGTTIGFIPTMGALHDGHLTMVRESVST-NDITVVSVFVNPLQFGPNEDFDAYPRQIDKDLELVSEVGADIVFHPAVEDIYPGELGIDVKVGPLADVLEGAKRPGHFDGVVTVVNKLFNIVMPDYAYFGKKDAQQLAIVEQMVKDFNHAVEIIGIDIVREADGLAKSSRNVYLTEQERQEAVHLSKSLLLAQALYQDGERQSKVIIDRVTEYLESHISGRIEEVAVYSYPQLVEQHEITGRIFISLAVKFSKARLIDNIIIGAE
1N2O Chain:A ((19-207))
---------DVADVSRALRLTGRRVMLVPTMGALHEGHLALVRAAKRVPGSVVVVSIFVNPMQFGA-------PRTPDDDLAQLRAEGVEIAFTPTTAAMYPDGLRTTVQPGPLAAELEGGPRPTHFAGVLTVVLKLLQIVRPDRVFFGEKDYQQLVLIRQLVADFNLDVAVVGVPTVREADGLAMSSRNRYLDPAQR--------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1N2O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110966 for 1356 contacts (-81.8/contact) +
2D Compatibility (PS) -19759 + (NN) -10622 + (LL) 9404
1D Compatibility (HY) -15600 + (ID) 4400
Total energy: -151943.0 ( -112.05 by residue)
QMean score : 0.592
(partial model without unconserved sides chains):
PDB file :
Tito_1N2O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N2O-query.scw
PDB file :
Tito_Scwrl_1N2O.pdb
: