Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKIGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAGSLVKDLKINDLLVATQLVQHDVDLSAFDHPLGFIPESAIFIETSGSLNALAKKIANEQHIALKEGVIASGDQFVHSKERKEFLVSEF-KASAVEMEGASVAFVCQKFGVPCCVLRSISDNADEKAGMSFDEFLEKSAHTSAKFLKSMVDEL
4G41 Chain:A ((7-234))
--KIGIIAAMEEELSLLLANL-LDAQEHQVLSKTYYTGRFGKHELILVQSGVGKVMSAMTVAILVEHFKAQAIINTGSAGAVASHLAIGDVVVADRLVYHDVDATAFGYAYGQMAGQPLYYDCDPQFVAIFKQVLKHEKTNGQVGLIATGDSFVAGQDKIDQIKTAFSNVLAVEMEGAAIAQAAHTAGKPFIVVRAMSDTAAHDANITFDQFIIEAGKRSAQILMTFLENL
General information:
TITO was launched using:
RESULT:
Template:
4G41.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -157383 for 1955 contacts (-80.5/contact) +
2D Compatibility (PS) -23759 + (NN) -1348 + (LL) 156
1D Compatibility (HY) -16800 + (ID) 3600
Total energy: -202734.0 ( -103.70 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_4G41.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4G41-query.scw
PDB file :
Tito_Scwrl_4G41.pdb
: