Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDFLNDHINVFGLIAALVILVLTIYESSSLIKEMRDSKSQGELMENGHLIDGIGEFANNVPVGWIASFMCVIVWAFWYFFFGYPLSSFSQIGQYNEEVKAHNQKFEAKWKHLGQKELVDMGQGIFLVHCSQCHGITADGLHGSAQNLLRWDKEEGIMDTIKHGSKGMDYPAGEMPAIEMDEKDAKAIASYVMAELSSVKKTKNPQLIDKGKELFESMGCAGCHGNDGKGLQENQVFAADLTT----YG---TESFLRNILTHGKKGNIGRMPSFKYKNFSDLQVKALVEFIKSLKPLED |
| 2GC4 Chain:D ((20-126)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EEGRDTEAVKHFLETGENV--YNEDPEILPEAEELYAG-MCSGCHGHYAEGKI-----GPGLNDAYWTYPGNETDVGLFSTLYGG---ATGQMGPMW-GSLTLDEMLRTMAWVRHLYTGDP |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2GC4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -4131 for 686 contacts (-6.0/contact) +
2D Compatibility (PS) -10830 + (NN) -8712 + (LL) 13052
1D Compatibility (HY) -4400 + (ID) 1000
Total energy: -16021.0 ( -23.35 by residue)
QMean score : 0.384
|
|
|