Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKFYTYSGETAAEALKIAQSHHGVDTLVFKTQEIRKKTLTSSGLYEIVVAVEEEENKKAPLIPESLYDEELNEEDVVMQLSSTVEEMRKLAGVSSNQRNYTFSKNKTLLEKDAPLEDTPLEANKQDALLQALKDEANHKKEREKREVKQEEEIKDINAQLSKIRDSLKLIQNMFWDEKNPN-S-VNIP-QEFAEIYKLAKQSGMKSSHLDEIMQLSLELMPLRMRENSVTIKRYF-REVLRKIILCR-PEDLNLRQKRILMLVGPTGVGKTTTLAKLAARYSRMLAKKYKVGIITLDNYRIGALEQLSWYANKMKMSIEAVIDA----KDFAKEIEAL--EYCDFILVDTTGHSQYDKEKIAGLKEFIDG------GYNIDVSLVLSVTTKYEDMKDIYDSFGVLGIDTLIFTKLDESRGLGNLFSLVHESQKPISYLSVGQEVPMDLKVATNEYLVDCMLDGFSNPNKEQA |
| 2YHS Chain:A ((194-495)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------GFFARLKRSLLKTKENLGSGFISLFRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKVDEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE---QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIFSVADQFGIPIRYIGVGERI-EDLRPFKADDFIEALFAR--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YHS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -129973 for 2423 contacts (-53.6/contact) +
2D Compatibility (PS) -30893 + (NN) -15277 + (LL) 12716
1D Compatibility (HY) -8400 + (ID) 2800
Total energy: -174627.0 ( -72.07 by residue)
QMean score : 0.528
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