Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MFDANCLKLMFVAGSQDFYHIKGDR--TNALLDTLELALQSKITAFQFRQKGDLALQDPVEIKRLALECQKLCKKYGTPFIINDEVRLALELKADGVHVGQEDMAIEEVVTLCQKRLFIGLSVNTLEQALKARHLDHIAYLGVGPIFPTPSKKDAKEVVGVNLLKKIHDSGVEKPLIAIGGITTDNASKLQK--FSGIAVISAITQAKDKALAVEKLLKNA-------
2TPS Chain:A ((2-227))
HGIRMTRISREMMKELLSVYFIMGSNNTKADPVTVVQKALKGGATLYQFREKGGDALTG-EARIKFAEKAQAACREAGVPFIVNDDVELALNLKADGIHIGQEDANAKEVRAAIGDM-ILGVSAHTMSEVKQAEEDG-ADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGVSMISAISQAEDPESAARKFREEIQTYKTGR
General information:
TITO was launched using:
RESULT:
Template:
2TPS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128325 for 1789 contacts (-71.7/contact) +
2D Compatibility (PS) -23612 + (NN) -19848 + (LL) 80
1D Compatibility (HY) -9600 + (ID) 3800
Total energy: -185105.0 ( -103.47 by residue)
QMean score : 0.532
(partial model without unconserved sides chains):
PDB file :
Tito_2TPS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2TPS-query.scw
PDB file :
Tito_Scwrl_2TPS.pdb
: