Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVYPQVLSIAGSDSGGGAGIQADLKAFQTFGVFGTSVITCITAQNTQGVHGVYPLSVESVKAQILAIRDDFSIKAFKMGALCNAQIIECVANALETCDFGLCVLDPVMVAKNGALLLEEEAILSLKKRLLPKTNLLTPNLPEVYALTGVQAR-DDKSASKAMGVLRDLGVKNAVIKGGHTEHFQGEFSNDWVFLEDAEFILSAKRFNTKNTHGTGCTLSSLIVGLLAQGLDLKNAITKAKELLTIIIQNPL--NIGHGHGPLNL-WSIKKHV
1JXH Chain:A ((23-288))
-MQRINALTIAGTDPSGGAGIQADLKTFSALGAYGCSVITALVAENTCGVQSVYRIEPDFVAAQLDSVFSDVRIDTTKIGMLAETDIVEAVAERLQRHHVRNVVLDTVML------LLSPSAIETLRVRLLPQVSLITPNLPEAAALLDAPHARTEQEMLAQGRALLAMGCEAVLMKG------------DWLFTREGEQRF---RVNTKNTHGTGCTLSAALAALRPRHRSWGETVNEAKAWLSAALAQADTLEVGKGIGPVHHFHAWW---
General information:
TITO was launched using:
RESULT:
Template:
1JXH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -184170 for 2140 contacts (-86.1/contact) +
2D Compatibility (PS) -26331 + (NN) -7050 + (LL) 1244
1D Compatibility (HY) -13600 + (ID) 4750
Total energy: -234657.0 ( -109.65 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_1JXH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JXH-query.scw
PDB file :
Tito_Scwrl_1JXH.pdb
: