Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGKIGIFFGTDSGNAEAIAEKISKAIGN-A-EVIDVAKASKEQFNGFTKVILVAPTAGAGDLQTDWEDFLGTLEASDFANKTIGLVGLGDQDTYSETFAEGIFHIYEK--AKAGKVVGQTPTDGYHFEASKA-VEGGKFVGLVID-EDNQDDLTDERIAKWVEQVKGSFA
1AG9 Chain:A ((1-167))
-AITGIFFGSDTGNTENIAKMIQKQLGKDVADVHDIAKSSKEDLEAYDILLLGIPTWYYGEAQCDWDDFFPTLEEIDFNGKLVALFGCGDQEDYAEYFCDALGTIRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDEDRQPE-LTAERVEKWVKQISEELH
General information:
TITO was launched using:
RESULT:
Template:
1AG9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88366 for 1358 contacts (-65.1/contact) +
2D Compatibility (PS) -17495 + (NN) -8369 + (LL) 132
1D Compatibility (HY) -12800 + (ID) 3550
Total energy: -130448.0 ( -96.06 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_1AG9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AG9-query.scw
PDB file :
Tito_Scwrl_1AG9.pdb
: