Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIVIKDAHFLTSSNNLSQCPASLTSEMVILGRSNVGKSTFINTLLGKNLAKSSATPGKTRLANFFSTTWEDKENALTTTFNVIDLPGFGYAKVSKSLKKEWEGFLWELLSVRVSIKLFIHLIDARHLDLEIDKNAKENIQALLRPDQAYLSLFTKFDKLNKNEQHRLFLNAPKPFLI--NTIHFNALSSKYPT-LEIVRQTLLKYLLTNPL
1PUI Chain:A ((11-198))
--------FVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQ------------QLINLFEVA---------DGKRLVDLPGYGEM------KRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIA---VLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS----
General information:
TITO was launched using:
RESULT:
Template:
1PUI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92913 for 1280 contacts (-72.6/contact) +
2D Compatibility (PS) -17717 + (NN) -5973 + (LL) 2512
1D Compatibility (HY) -6000 + (ID) 2400
Total energy: -122491.0 ( -95.70 by residue)
QMean score : 0.333
(partial model without unconserved sides chains):
PDB file :
Tito_1PUI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PUI-query.scw
PDB file :
Tito_Scwrl_1PUI.pdb
: