Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLS-SPSIETLFAILEVLGSTPKDFFDEEEHNQ---KVIYGELEHTFFEDE---EKGYRIKWLVPESNEKEMEPVLLEIEANSCFK--SFEPSLSETFAYVLKGEVTVLLGRNE----YVAKKGEAIYFHAADEHQIINRS-SEHATLILVATESYL
2BNM Chain:A ((10-197))
-GFAELLKDRREQVKMDHAALASLLGETPETVAAWENGEGGELTLTQLGRIAHVLGTSIGALTPPAGNDLDDGVIIQMPDERPILKGVRDNVDYYVYNCLVRTKRAPSLVPLVVDVLTDNPDDAKFNSGHAGNEFLFVLEGEIHMKWGDKENPKEALLPTGASMFVEEHVPHAFTAAKGTGSAKLIAVN-----
General information:
TITO was launched using:
RESULT:
Template:
2BNM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58347 for 1142 contacts (-51.1/contact) +
2D Compatibility (PS) -18680 + (NN) -3231 + (LL) 604
1D Compatibility (HY) -9200 + (ID) 1450
Total energy: -90304.0 ( -79.08 by residue)
QMean score : 0.421
(partial model without unconserved sides chains):
PDB file :
Tito_2BNM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BNM-query.scw
PDB file :
Tito_Scwrl_2BNM.pdb
: