Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQTYVMVKPDGVERGLIGEIVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFEDLIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEADPGTIRADYAIHTN---RNVIHGSDSPESAQREIQLFFAPDEILSYQKAVDTWI
2DYA Chain:B ((8-153))
-ERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHASDSKESAEREISLFFKPEELFEYPRAAD---
General information:
TITO was launched using:
RESULT:
Template:
2DYA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68896 for 1088 contacts (-63.3/contact) +
2D Compatibility (PS) -15256 + (NN) -3433 + (LL) 620
1D Compatibility (HY) -15600 + (ID) 4200
Total energy: -106765.0 ( -98.13 by residue)
QMean score : 0.472
(partial model without unconserved sides chains):
PDB file :
Tito_2DYA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DYA-query.scw
PDB file :
Tito_Scwrl_2DYA.pdb
: