Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLEKVNEAVAKIRESYTGTPKIGLILGSGLGVLADEVNQPIKLSYSEIPHFPVSTVEGHAGQFVFGELENKEVVAMQGRFHFYEGYSMQDVTFPVRVMKELGVEVLIVTNAAGGVNELYSAGDLMLISDHIN---FTGTSPLIGPNDEHFGPRFPDMSEAYNLALRVDARLIAQEL--NLTIREGVYAGFSGPTYETPAEIQMMRTLGADAVGMSTVPEVIIANHAGLRVLGISCITNMAAGILD--QPLSHTEVIETTDQVRSTFLQYVKAIVAKIS
4GKA Chain:D ((60-317))
--------------------PQVAIICGSGLGGLTDKLTQAQIFDYSEIPNFPRSTVPGHAGRLVFGFLNGRACVMMQGRFHMYEGYPLYKVTFPVRVFHLLGVDTLVVTNAAGGLNPKFEVGDIMLIRDHINLPGFSGQNPLRGPNDERFGDRFPAMSDAYDRTMRQRALSTYKQMGEQRELQEGTYVMVAGPSFETVAECRVLQKLGADAVGMSTVPEVIVARHCGLRVFGFSLITNKV--IMDYE------------KQAAQKLEQFVSILMASI-
General information:
TITO was launched using:
RESULT:
Template:
4GKA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -178317 for 1970 contacts (-90.5/contact) +
2D Compatibility (PS) -24979 + (NN) -6477 + (LL) 2564
1D Compatibility (HY) -24800 + (ID) 6450
Total energy: -238459.0 ( -121.05 by residue)
QMean score : 0.606
(partial model without unconserved sides chains):
PDB file :
Tito_4GKA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GKA-query.scw
PDB file :
Tito_Scwrl_4GKA.pdb
: