Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKPIIAGNWKMNKTAAKAGQFAEDVKNNVPSSDAVESVVAAPALFLQELVRLTEGTDLRVSAQNCYFEDEGAFTGEISPFALADLGVSYVIIGHSERREYFHETDEDINKKAHAIFKHGMTPIICCGETLDQREAGQTDTWVRGQIRAALAGLTEEQVIKSVIAYEPIWAIGTGKSSTSADANETCAVIRAEVADAVSQKAADAVRIQYGGSVKPENIADYLAESDIDGALVGGASLEPASFLALLEAVK
1TPW Chain:A ((3-245))
-RKFFVGGNWKMNGDKKSLGELIHTLNGAKLSAD-TEVVCGAPSIYL-DFARQKLDAKIGVAAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGHPERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVKDWS--KVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKTHVSDAVAQSTRIIYGGSVTGGNCKELASQHDVDGFLVGGASLKP-EFVDIINA--
General information:
TITO was launched using:
RESULT:
Template:
1TPW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87651 for 2096 contacts (-41.8/contact) +
2D Compatibility (PS) -26649 + (NN) -12161 + (LL) 1268
1D Compatibility (HY) -17200 + (ID) 5150
Total energy: -147543.0 ( -70.39 by residue)
QMean score : 0.492
(partial model without unconserved sides chains):
PDB file :
Tito_1TPW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TPW-query.scw
PDB file :
Tito_Scwrl_1TPW.pdb
: