Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKIRLSKFIKMIVVILFLISVAASFYFFHVAQVRDDKSFISNGQRKPGNSLYAYDKSFDKLLKQKIEMTNQNIKQVAWYVPAAKKTHKTAVVVHGFANSK--ENMKAYGWLFHKLGYNVLMPDNIAHGESHGQLIGYG-WNDRENIIKWTEMIVDKNPSSQITLFGVSMGGATVMMASGEKLPSQVVNIIEDCGYSSVWDELKFQAKEMYGLPAFPLLYEVSTISKIRAGFSYG--QASSVEQLKKNNLPALFIHGDKDNFVPTSMVYDNYKATAGKKELYIVKGAKHAKSFETEPEKYEKRISSFLKKYEK |
| 3PF8 Chain:A ((16-266)) | ---------------------------------------------------------NLYFQGMATITLERDGLQLVGTREEPFGEIYDMAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNGHGDSDGKFENMTVLNEIEDANAILNYVKTDPHVRNIYLVGHSQGGVVASMLAGLYPDLIKKVVLLAPAATLKGDALEGNTQGVTYNPDHIPDRLPFKDLTLGGFYLRIAQQLPIYEVSAQFTKPVCLIHGTDDTVVSPNAS-KKYDQIYQNSTLHLIEGADHCFS-DSYQKNAVNLTTDFLQN--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PF8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -57590 for 2119 contacts (-27.2/contact) +
2D Compatibility (PS) -26123 + (NN) -5174 + (LL) 5424
1D Compatibility (HY) 400 + (ID) 2000
Total energy: -85063.0 ( -40.14 by residue)
QMean score : 0.336
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