Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKQFAVDFIEASREEASAILEFLNTVTEETDFILHTVSNQLSLSEMETFIENTLMTKNCICLIAKLKNKVIGLITIISQSDI-EIEHVGDLFIAVQKDYWGYGIGHILMEEAIEWASDNDITRRLELSVQGRNERAIHLYQKFGFEIDGLQTRGIKRENGEFLDIYRMSKLID
1YR0 Chain:A ((4-166))
-----SVELRDATVDDLSGIMEIYNDAVVNTT-AIW-NEVVVDLENRKDWFAARTS-RGFPVIVAILDGKVAGYASYGDWRAFDGYRHTREHSVYVHKDARGHGIGKRLMQALIDHAGGN-DVHVLIAAIEAENTASIRLHESLGFRVVGRFSEVGT-KFGRWLDLTCMELKL-
General information:
TITO was launched using:
RESULT:
Template:
1YR0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120090 for 1191 contacts (-100.8/contact) +
2D Compatibility (PS) -17431 + (NN) -3597 + (LL) 680
1D Compatibility (HY) -5200 + (ID) 1850
Total energy: -147488.0 ( -123.84 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_1YR0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YR0-query.scw
PDB file :
Tito_Scwrl_1YR0.pdb
: