Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQPILQVSDLSVYYNKKKALKEVSMDFYPNEITALIGPSGSGKSTLLRAINRMGDLNPEVTLTGAVMYNGHNVYSPRTDTVEL----RKEIGMVFQQPNPFPM-SVFENVVYGLRLKGIKDKATLDEAVETSLKGASIWDEVKDRLHDSALG-LSGGQQQRVCIARTLATKPKIILLDEPTSALDPISAGKIEETLHGL--KDQYTMLLVTRSMQQASRISDRTGFFLDGNLIEYGNTKEMFMNPKHKETEDYITGKFG
1L2T Chain:B ((20-223))
-------------------ALKNVNLNIKEGEFVSIMGPSGSGKSTML---NIIGCLDKPTE--GEVYID--NIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFK-YRGAMSGEERRKRALECLKMA-ELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKLRGF------------------
General information:
TITO was launched using:
RESULT:
Template:
1L2T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71858 for 1541 contacts (-46.6/contact) +
2D Compatibility (PS) -21359 + (NN) -12999 + (LL) 2760
1D Compatibility (HY) -14800 + (ID) 3950
Total energy: -122206.0 ( -79.30 by residue)
QMean score : 0.415
(partial model without unconserved sides chains):
PDB file :
Tito_1L2T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L2T-query.scw
PDB file :
Tito_Scwrl_1L2T.pdb
: