Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEQFLKDNFSLEGKVALITGASYGIGFSIATAFARAGATIVFNDIKQELVDKGISAYKKLGIKAHGYVCDVTDEDGINEMVDKISQDVGVIDILVNNAGIIKRTPMLEMSAADFRQVIDIDLNAPFIVSKAVLPGMIQKGHGKIINICSMMSELGRETVAAYAAAKGGLKMLTKNIASEYGSANIQCNGIGPGYIATPQTAPLRERQDDGSRHPFDQFIIAKTPAARWGEAEDLGAPAIFLASDASNFINGHILYVDGGILAYIGKQPQ
4BO2 Chain:B ((24-266))
----------SLQGKVALVTGASRGIGQAIALELGRLGAVVIGTATSASGAEKIAETLKANGVEGAGLVLDVSSDESVAATLEHIQQHLGQPLIVVNNAGI-----------DEWFDVVNTNLNSLYRLSKAVLRGMTKARWGRIINIGSVVGAMGNAGQTNYAAAKAGLEGFTRALAREVGSRAITVNAVAPGFIDTDMTRELPEAQREA--------LLGQIPLGRLGQAEEIAKVVGFLASDGAAYVTGATVPVNGGMYMS------
General information:
TITO was launched using:
RESULT:
Template:
4BO2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -175549 for 1961 contacts (-89.5/contact) +
2D Compatibility (PS) -24764 + (NN) -5223 + (LL) 2716
1D Compatibility (HY) -16000 + (ID) 4450
Total energy: -223270.0 ( -113.86 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_4BO2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BO2-query.scw
PDB file :
Tito_Scwrl_4BO2.pdb
: