Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKSMIAKQQRTPKFKVQEYTRCERCGRPHSVIRKFKLCRICFRELAYKGQIPGVKKASW
4GKJ Chain:N ((1-60))
-ARKALIEKAKRTPKFKVRAYTRCVRCGRARSVYRFFGLCRICLRELAHKGQLPGVRKASW
General information:
TITO was launched using:
RESULT:
Template:
4GKJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28426 for 323 contacts (-88.0/contact) +
2D Compatibility (PS) -6031 + (NN) -2173 + (LL) 208
1D Compatibility (HY) -7200 + (ID) 2100
Total energy: -45722.0 ( -141.55 by residue)
QMean score : ?
(partial model without unconserved sides chains):
PDB file :
Tito_4GKJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GKJ-query.scw
PDB file :
Tito_Scwrl_4GKJ.pdb
: