Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVVRSIGKKMQRISGPNALAVKGRPTQVYGHTHVRLDCRFMADSEFTAPEVTQLAEGLHRALSKLISMLRRGDPNGAAAGDLTLAQLSILVTLLDQGPIRMTDLAAHERVRTPTTTVAIRRLEKIGLVKRSRDPSDLRAVLVDITPQGRAVHGESLANRRAALAALLSQLPRSDLETLRKALAPLERLASGEPASGPASNSPARKRA
2RDP Chain:A ((11-149))
-----------------------------------------------------RTVAELEKLLRYIAANLKQRGREILTNYPITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEH---VVRIRLLEKGERIIEEVIEKRQRDLANVLESFSDEEIVVFERCLRKLHQEMTK----------------
General information:
TITO was launched using:
RESULT:
Template:
2RDP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48065 for 819 contacts (-58.7/contact) +
2D Compatibility (PS) -14913 + (NN) -7971 + (LL) 3896
1D Compatibility (HY) -8000 + (ID) 1500
Total energy: -76553.0 ( -93.47 by residue)
QMean score : 0.571
(partial model without unconserved sides chains):
PDB file :
Tito_2RDP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RDP-query.scw
PDB file :
Tito_Scwrl_2RDP.pdb
: