Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRTPRRHCRRIAVLAAVSIAATVVAGCSSGSKPSGGPLPDAKPLVEEATAQTKALKSAHMVLTVNGKIPGLSLKTLSGDLTTNPTAATGNVKLTLGGSDIDADFVVFDGILYATLTPNQWSDFGPAADIYDPAQVLNPDTGLANVLANFADAKAEGRDTINGQNTIRISGKVSAQAVNQIAPPFNATQPVPATVWIQETGDHQLAQAQLDRGSGNSVQMTLSKWGEKVQVTKPPVS---
3MH9 Chain:A ((35-239))
----------------------------------GGPLPDAKPLVEEATAQTKALKSAHMVLTVNGKIPGLSLKTLSGDLTTNPTAATGNWKLTLGGSDIDADFVVFDGILYATLTPNQWSDFGPAADIYDPAQVLNPDTGLANVLANFADAKAEGRDTINGQNTIRISGKVSAQAVNQIAPPFNATQPVPATVWIQETGDHQLAQAQLDRGSGNSVQMTLSKWGEKVQVTKPPVSKLH
General information:
TITO was launched using:
RESULT:
Template:
3MH9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82454 for 1573 contacts (-52.4/contact) +
2D Compatibility (PS) -22511 + (NN) -16247 + (LL) 2484
1D Compatibility (HY) -22000 + (ID) 10050
Total energy: -150778.0 ( -95.85 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_3MH9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MH9-query.scw
PDB file :
Tito_Scwrl_3MH9.pdb
: