Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRKPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQTLVDGDKLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALKHGLTPIVCIGEHLDVREAGNHVAHNIEQLRGSLAGLLAEQIGSVVIAYEPVWAIGTGRVASAADAQEVCAAIRKELASL--ASPRIADTVRVLYGGSVNAKNVGDIVAQDDVDGGLVGGASLDGEHFATLAAIAAGGPLP
4YMZ Chain:A ((2-250))
-ARKTIIAGNWKMNLSLKEAVFLAHSIREKIPSISKDKVSM-VFPSTLHLENVSKILEGSSV--IVGAQNCYHSGLAAFTGETSPDQLKEIGVKVVMVGHSERRQFLGESNFFCNDKIRFLLKNEFTVLYCVGETLSERESGKTLEVLSSQIREGLKGIDSVFFSNLILAYEPVWAIGTGKVATPSQAQEVHSFIRKEISGLFVGASSISESISILYGGSVKPDNIQDLLKEKDIDGGLVGGASQKISSFAGL----------
General information:
TITO was launched using:
RESULT:
Template:
4YMZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139349 for 2101 contacts (-66.3/contact) +
2D Compatibility (PS) -27509 + (NN) -18645 + (LL) 960
1D Compatibility (HY) -22400 + (ID) 5000
Total energy: -211943.0 ( -100.88 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_4YMZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YMZ-query.scw
PDB file :
Tito_Scwrl_4YMZ.pdb
: