Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSPATVLDSILEGVRADVAAREASVSLSEIKAAAAAAPPPLDVMAALREPGIGVIAEVKRASPSAGALATIADPAKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEADRALKAGAKVIGVNARDLMTLDVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAGADAVLVGEGLVTSGDPRAAVADLVTAGTHPSCPKPAR
3QJA Chain:A ((4-270))
---ATVLDSILEGVRADVAAREASVSLSEIKAAAAAAPPPLDVMAALREPGIGVIAEVK-------------DPAKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEADRALKAGAKVIGVNARDLMTLDVDRDCFARIAPGLPSSVIRIAESGVRGTADLLAYAGAGADAVLVGEGLVTSGDPRAAVADLVTAGTHPSCPKP--
General information:
TITO was launched using:
RESULT:
Template:
3QJA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -173855 for 2144 contacts (-81.1/contact) +
2D Compatibility (PS) -28203 + (NN) -16596 + (LL) 1168
1D Compatibility (HY) -32400 + (ID) 12700
Total energy: -262586.0 ( -122.47 by residue)
QMean score : 0.613
(partial model without unconserved sides chains):
PDB file :
Tito_3QJA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QJA-query.scw
PDB file :
Tito_Scwrl_3QJA.pdb
: