Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTQDGTWVDESDWQLDDSEIAESGAAPVVAVVGRPNVGKSTLVNRILGRREAVVQDIPGVTRDRVCYDALWTGRRFVVQDTGGWEPNAKGLQRLVA-EQASVA-MRTADAVILVVDAGVGATAADEAAARILLRSGKPVFLAANKVDSEKGESD--AAALWSLGLGEPHAISAMHGRGVAD-LLDGVLAALPEVGESASASGGPR--RVALVGKPNVGKSSLLNKLAGDQRSVVHEAAGTTVDPVDSLIELGGDVWRFVDTAGLRRKVGQASGHEFYASVRTHAAIDSAEVAIVLIDASQPLTEQDLR-VIS-MVIEAGRALVLAYNKWDLV--DEDRRELLQREIDRELVQVRWAQRVNISAKTGRAVHK-LVPAM-EDALASWDTRIATGPLNTWLTEVTAATPPPVRGGKQPRILFATQATARPPTFVLFTT--GFLEAGYRRFLERRLRET-FGFDGSPIRVNVRVREKRAGKRR |
| 1MKY Chain:A ((2-439)) | --------------------------ATVLIVGRPNVGKSTLFNKLVK--------------DPVQDTVEWYGKTFKLVDTCGVFDNPQDIIS-QKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKERALVSP------IPVDDEVFIDGRKYVFVDTAGLEK----------YSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLME--RRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDA--MNLAYASYTTKVPSSAINSALQKVLAFTNLP----RGLKIFFGVQVDIKPPTFLFFVNSIEKVKNPQKIFLRKLIRDYVFPFEGSPIFLKFKRSR------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1MKY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -169295 for 3071 contacts (-55.1/contact) +
2D Compatibility (PS) -43301 + (NN) -22898 + (LL) 4596
1D Compatibility (HY) -26400 + (ID) 6600
Total energy: -263898.0 ( -85.93 by residue)
QMean score : 0.483
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