Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MTRIIGGVAGGRRIAVPPRGTRPTTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVE-SDQRSAAVIARNIEALGLSGATLRRGAV-AAVVAAGTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERATTCAPLTWPEGWRRWPQRVYGDTRLELAERLFANV
2FPO Chain:D ((12-194))
GQIRIIGGQWRGRKLPVP---DSPGTDRVRETLFNWLAPV--IVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLAT-LKAGNARVVNSNAMSFLAQ--KGTPHNIVFVDPPFRRGL--LEETINLLEDNGWLADEALIYVESEVENGLPTVPANWSLHREKVAGQVAYRLYQREAQ--
General information:
TITO was launched using:
RESULT:
Template:
2FPO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99047 for 1427 contacts (-69.4/contact) +
2D Compatibility (PS) -19151 + (NN) -7404 + (LL) 108
1D Compatibility (HY) -8800 + (ID) 2950
Total energy: -137244.0 ( -96.18 by residue)
QMean score : 0.521
(partial model without unconserved sides chains):
PDB file :
Tito_2FPO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FPO-query.scw
PDB file :
Tito_Scwrl_2FPO.pdb
: