Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTKYIKADRFFYADHVKENGYLEIKDNHFGKWIENIS--GQEEILDYSGYQIAPGLVDTHIHGFAGADVMDCD----SEGILRMSAGLLSTGVTSFLPTTLTSDTKRLEEASKSVAAVAGKEQGAKIQGIYFEGPYFTEEYKGAQNPIYMRNPNLEEFAQWQKAAKGLITKIALAPEREGVEEFVSAITKQGVTVALGHSNGTYKEAKKAVKAGASVWVHAYNGMRGLTHREPGMVGAVYNLPNTYAELICDGHHVDPVACDILMTQKGHNHVALITDCMAAGGAPDGDYMLGELPVVVSNGTAR----LKDGGNLA---GSILKLKDGLKNVVEWGIATPEEAVRMASYVPAVSVGIDNVCGQIKEGYAADFIVLDKHLDLVATYLDGEKRWQS |
| 1YRR Chain:A ((1-381)) | -MYALTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEIEQRSLNGAILSPGFIDVQLNGCGGVQFNDTAEAVSVETLEIMQKANEKSGCTNYLPTLITTSDELMKQGVRVMREYLA-KHPNQALGLHLEGPWLNLVKK-THNPNFVRKP-DAALVDFLCENADVITKVTLAPEMV-PAEVISKLANAGIVVSAGHSNATLKEAKAGFRAGITFATHLYNAMPYITGREPGLAGAILDEADIYCGIIADGLHVDYANIRNAKRLKG-DKLCLVTDATAPA--------GANIEQFIFAGKTIYYRNGLCVDENGTLSGSSLTMIEGVRNLVEHCGIALDEVLRMATLYPARAIGVEKRLGTLAAGKVANLTAFTPDFKITKTIVNGNEVVTQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YRR.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -193423 for 3324 contacts (-58.2/contact) +
2D Compatibility (PS) -39643 + (NN) -15042 + (LL) -300
1D Compatibility (HY) -15600 + (ID) 4750
Total energy: -268758.0 ( -80.85 by residue)
QMean score : 0.438
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