Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLVREIRQYRLKKISKEEKTPGCVKIKKCIIM
1KAO Chain:A ((1-166))
MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY------------------------
General information:
TITO was launched using:
RESULT:
Template:
1KAO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89601 for 1325 contacts (-67.6/contact) +
2D Compatibility (PS) -18662 + (NN) -8646 + (LL) 2064
1D Compatibility (HY) -20800 + (ID) 4100
Total energy: -139745.0 ( -105.47 by residue)
QMean score : 0.572
(partial model without unconserved sides chains):
PDB file :
Tito_1KAO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KAO-query.scw
PDB file :
Tito_Scwrl_1KAO.pdb
: