Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MASLSQLSSHLNYTCGAENSTGASQARPHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASILNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLFGFNTT--GDPTVCS--ISNPDFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRKR--------------------------------ILTR--------------------------------QNSQCNSVRPGFPQQTLSPDPAHL-ELKRYYSICQDTALGGPGFQERGGELKR-EEKTRNSLSPTIAPKLSLEVRKLSNGRLSTSLKLGP-LQPRGVPLREKKATQMVAIVLGAFIVCWLPFFLTHVLNTH---------CQTCHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKILSC--------- |
| 3ODU Chain:A ((37-502)) | -------------PCFREENANF----NKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSMTDKYRLHLSVADLLFVITLPFWAVDAVAN---WYFGNFLCKAVHVIYTVNLYSSVWILAFISLDRYLAIVHATNSQRPRKLLAEKVVYVG---VWIPALLLTIPDFIFANVSEADDRYICDRFYPNDLWVVVFQFQHIMVGLILPGIVILSCYCIIISKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHALTSGRPLEVLFQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3ODU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -200595 for 2681 contacts (-74.8/contact) +
2D Compatibility (PS) -37112 + (NN) 4500 + (LL) 1528
1D Compatibility (HY) -24800 + (ID) 4000
Total energy: -260479.0 ( -97.16 by residue)
QMean score : 0.135
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