Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDRRMWGAHVFCVLSPLPTVLGHMHPECDFITQLREDESACLQAAEEMPNTTLGCPATWDGLLCWPTAGSGEWVTLPCPDFFSHFSSESGAVKRDCTITGWSEPFPPYPVACPVPLELLAEEESYFSTVKIIYTVGHSISIVALFVAITILVALRRLHCPRN----YVHTQLFTTFILKAGAVFL----KDAALFHSDDTDHCSFSTVLCKVSVAASHFATMTNFSWLLAEA------VYLNCLLASTSPSSRRAFWWLVLAGWGLPVLFTGTWVSCKLAFEDIACWDLDDTSPYWWIIKGPIVLSVGVNFGLFLNII------RILVRKLEPAQGSL--HTQSQYWRLSKSTLFLIPLFGIHYIIFNFLPD---NAGLGIRLPLELGLGSFQGFIVAILY-------CFLNQEVRTEISRKWHGHDPELLPAWRTRAKWTTPSRSAAKVLTSMC |
| 5CMN Chain:E ((3-260)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------LCPGLLKGVYQSEHLFESD-HQSGAWCKDPLQASDKIYYMPWTPYRT--DTLTEYSSKDDFIAGRPTTTYKLPHRVDGTGFVVYDGALFFNKERTRNIVKFDLRTR-----IKSGEAI--------IANANYHDTSPYRWGGKSDIDLAVDEN-GLWVIYATEQNNGKIVISQLNPYTLRIEGTWDTAYDKRSASNAFMI--CGILYVVKSNKIDYIYNTDQSKDSLVDVPFPNSYQYIAAVDYNPRDNLLYVWNNYHVVKYSLDF-------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 5CMN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -177760 for 1657 contacts (-107.3/contact) +
2D Compatibility (PS) -23187 + (NN) -1584 + (LL) 13760
1D Compatibility (HY) -8000 + (ID) 2450
Total energy: -199221.0 ( -120.23 by residue)
QMean score : 0.208
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