Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIIIGNASKELGKLIANKLNVQPFSAQVSKFADGAINAEVESNLCSQEVYIIQSISPPVNDHLMELLFIIDAVKRSGTKRITTIIPYYGYSRQDRIIK-NNNMQSALNAKLVANLIQTAGASSVAVIDLHSSQIEGFFDVPLTNLSCFEAFADSIHI---ENLAIVAPDVGAIGRARAFAKTLEKKYEIKLSDKIIIIDKYREKAGTSHVMNVIGEATNKNCVIVDDIVDSGGTLCNAALALKNRRARSVISCITHGVLSGNAIEKISSSSLDKLVTTDTIFHKL--EKTDKIEIVSIANILTHFIQGGKDAS
3DAH Chain:A ((8-309))
LMVFTGNANPALAQEVVKILGIPLGKAMVSRFSDGEIQVEIQENVRGKDVFVLQSTCAPTNDNLMELMIMVDALKRASAGRITAAIPYFGYARQDRRPRSAR---VAISAKVVANMLEIAGVERIITMDLHADQIQGFFDIPVDNIYATPILLGDLRKQNYPDLLVVSPDVGGVVRARALAKQLN--------CDLAI--------------------EGRTCVIMDDMVDTAGTLCKAAQVLKERGAKQVFAYATHPVLSGGAADRIAASALDELVVTDTIPLSAESLACPKIRALSSAGLLAETFSRIRRGD
General information:
TITO was launched using:
RESULT:
Template:
3DAH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -233632 for 2274 contacts (-102.7/contact) +
2D Compatibility (PS) -30346 + (NN) -15185 + (LL) 2372
1D Compatibility (HY) -22400 + (ID) 5650
Total energy: -304841.0 ( -134.05 by residue)
QMean score : 0.588
(partial model without unconserved sides chains):
PDB file :
Tito_3DAH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DAH-query.scw
PDB file :
Tito_Scwrl_3DAH.pdb
: