Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKIRVGINGLGRIGRSVLRAIHEVGKYNEQIEVVAVNGSLSTEQHAHLIRYDSVHGKFNGDIGFNESENWISTNGKKFSLYRERNPENIPWD---VDVVLECTGAFNKRAEAAKH---NTGKVIVSAPVSDADITIVYGVNNDMLKKEHKVISAGSCTTNCLAPVVKVLHFNLDMKSGFMTTVHAYTNDQNVLDGNHRDLRRARACGLSIVPTTTGAAKTIGSVIPELKGKLDGTAIRVPVANVSMVDLKFTTDKKVTAKEINEIFKNSVND----VLSICKEPLVSIDFVHNPYSAIVDLAGTYVTG-DICRVAAWYDNEWAFSLRMLDIALLCYNRI |
| 1RM4 Chain:B ((1-334)) | -KLKVAINGFGRIGRNFLRCWH--GRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVK-TAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPGKGDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKW |
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General information:
TITO was launched using:
| RESULT:
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Template: 1RM4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -239985 for 2822 contacts (-85.0/contact) +
2D Compatibility (PS) -34769 + (NN) -10026 + (LL) 636
1D Compatibility (HY) -29200 + (ID) 7750
Total energy: -321094.0 ( -113.78 by residue)
QMean score : 0.490
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