Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVRRITLNSNFMFGASDIKSLPNESAPEIAFAGRSNVGKSSLINLLINSKKAARVSSKPGCTRQINFYSM-YNDKFRLVDLPGYGCSHASKDETIQYLGLVEYYLIHRRNLRRVFVLIDSKVRLKEIDKDFIYWLTYNNINFDVVLTKIDKVDRENLDAIIESTRKWINNESVSIRQISVRVKYEMTKVRDEFFKFTR
3B1V Chain:A ((3-162))
-------------------------MTEIALIGNPNSGKTSLFNLITGH-NQ-RVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYSP----EAKVARDYL-LSQRADSILNVVDATNLE--RNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSYHL---GVPVVATSALKQTGVDQVVKKAAHTTT
General information:
TITO was launched using:
RESULT:
Template:
3B1V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113385 for 1335 contacts (-84.9/contact) +
2D Compatibility (PS) -16253 + (NN) -786 + (LL) 2460
1D Compatibility (HY) -800 + (ID) 1700
Total energy: -130464.0 ( -97.73 by residue)
QMean score : 0.440
(partial model without unconserved sides chains):
PDB file :
Tito_3B1V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3B1V-query.scw
PDB file :
Tito_Scwrl_3B1V.pdb
: