Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHNDLKEVLLTEEDIQNICKELGAQLTKDYQGK-------PLVCVGILKGSAMFMSDLIKRI---DTHLSIDFMDVSSYHGGTESTGEVQIIKDLGSSIENKDVLIIEDILETGTTLKSITELLQSRKVNSLEIVTLLDKPNRRKADIEAKYVGKKIPDEFVVGYGLDYRELYRNLPYIGTLKPEVYSN
1TC1 Chain:A ((8-187))
-----EKILFTEEEIRTRIKEVAKRIADDYKGKGLRPYVNPLVLISVLKGSFMFTADLCRALCDFNVPVRMEFICVSSY---------VRMLLDTRHSIEGHHVLIVEDIVDTALTLNYLYHMYFTRRPASLKTVVLLDKREGRRVPFSADYVVANIPNAFVIGYGLDYDDTYRELRDIVVLRPE----
General information:
TITO was launched using:
RESULT:
Template:
1TC1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122407 for 1251 contacts (-97.8/contact) +
2D Compatibility (PS) -17101 + (NN) -822 + (LL) 260
1D Compatibility (HY) -20000 + (ID) 3500
Total energy: -163570.0 ( -130.75 by residue)
QMean score : 0.514
(partial model without unconserved sides chains):
PDB file :
Tito_1TC1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TC1-query.scw
PDB file :
Tito_Scwrl_1TC1.pdb
: