Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLNEIQILNNGYPMPSVGLGVYKISDEDMTKVVNA---AIDAGYRAFDTAYFYDNEASLGRALK----DNGVDREDLFITTKLWNDYQGYEKTFEYFNKSIENLQTDYLDLFLIHWPCEA-----------DGLFL-------ETYKAMEELYEQGKVKAIGVCNFNVHHLEKLMAQSSIK--PMVNQIEVHPYFNQQELQEFCDRHDIKVTAWMPLMRNRG----------LLDNPVIVKIAEKYHKTPAQVVLRWHLAHNRIIIPKSQTPKRIQENIDILDFNLELTEVAEIDALDRNARQGKNPDDVKIGDLK |
4L1W Chain:B ((12-306)) | -------LNDGHFMPVLGFGTYAPAEVPKSKALEAVKLAIEAGFHHIDSAHVYNNEEQVGLAIRSKIADGSVKREDIFYTSKLWSNSHRPELVRPALERSLKNLQLDYVDLYLIHFPVSVKPGEEVIPKDENGKILFDTVDLCATWEAMEKCKDAGLAKSIGVSNFNHRLLEMILNKPGLKYKPVCNQVECHPYFNQRKLLDFCKSKDIVLVAYSALGSHREEPWVDPNSPVLLEDPVLCALAKKHKRTPALIALRYQLQRGVVVLAKSYNEQRIRQNVQVFEFQLTSEEMKAIDGLNRNVR-------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4L1W.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -135606 for 2107 contacts (-64.4/contact) +
2D Compatibility (PS) -28021 + (NN) -13270 + (LL) 1028
1D Compatibility (HY) -22800 + (ID) 5250
Total energy: -203919.0 ( -96.78 by residue)
QMean score : 0.495
|
|
|