Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPGMVASLTTLPVIGVPIETKSLKGIDSLLSIVQMPGGIPVATTAIGAAGAKNAGILAARMLSIQNPSLVEKLNQYESSLIQKVEDMQNELQ-----------
1O4V Chain:A ((14-182))
PRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAIN--NAKNAGILAASILGIKYPEIARKVKEYKERMKREVLEKAQRLEQIGYKEYLNQK
General information:
TITO was launched using:
RESULT:
Template:
1O4V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131356 for 1298 contacts (-101.2/contact) +
2D Compatibility (PS) -17382 + (NN) -6707 + (LL) 288
1D Compatibility (HY) -17600 + (ID) 4400
Total energy: -177157.0 ( -136.48 by residue)
QMean score : 0.641
(partial model without unconserved sides chains):
PDB file :
Tito_1O4V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1O4V-query.scw
PDB file :
Tito_Scwrl_1O4V.pdb
: