Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKATTIIGIAGGSGSGKTTVTNEIMKNL-------EGHSVALLAQDYYYKD--QKHLTFDERLETNYDHPFAFDNDLLIENLKDLKNGKAVEVPTYDYASHTRSDITIDFKPKDVIIVEGIFALENKVLRDMMDVKIYVDTDADLRILRRLTRDTKERGRSMDSVINQYLSVVRPMHDQFIEPTKKYADIIIPEGGSNKVAIDIMTTKIQSLVSKQ-
2UVQ Chain:A ((24-237))
--RPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRDVRD----LEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNGDI
General information:
TITO was launched using:
RESULT:
Template:
2UVQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77758 for 1509 contacts (-51.5/contact) +
2D Compatibility (PS) -22045 + (NN) -12314 + (LL) 272
1D Compatibility (HY) -18800 + (ID) 4150
Total energy: -134795.0 ( -89.33 by residue)
QMean score : 0.452
(partial model without unconserved sides chains):
PDB file :
Tito_2UVQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2UVQ-query.scw
PDB file :
Tito_Scwrl_2UVQ.pdb
: