Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKLITTVKEMQHIVKAAKRSGTTIGFIPTMGALHDGHLTMVRESVST-NDITVVSVFVNPLQFGPNEDFDAYPRQIDKDLELVSEVGADIVFHPAVEDIYPGELGIDVKVGPLADVLEGAKRPGHFDGVVTVVNKLFNIVMPDYAYFGKKDAQQLAIVEQMVKDFNHAVEIIGIDIVREADGLAKSSRNVYLTEQERQEAVHLSKSLLLAQALYQDGERQSKVIIDRVTEYLESHISGRIEEVAVYSYPQLVEQHEITGRIFISLAVKFSKARLIDNIIIGAE
1N2J Chain:B ((19-207))
---------DVADVSRALRLTGRRVMLVPTMGALHEGHLALVRAAKRVPGSVVVVSIFVNPMQFGAGGDLDAYPRTPDDDLAQLRAEGVEIAFTPTTAAMYPDGLRTTVQPGPLAAELEGGPRPTHFAGVLTVVLKLLQIVRPDRVFFGEKDYQQLVLIRQLVADFNLDVAVVGVPTVREADGLAMSSRNRYLDPAQR--------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1N2J.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116410 for 1420 contacts (-82.0/contact) +
2D Compatibility (PS) -20438 + (NN) -11123 + (LL) 9164
1D Compatibility (HY) -16400 + (ID) 4600
Total energy: -159807.0 ( -112.54 by residue)
QMean score : 0.603
(partial model without unconserved sides chains):
PDB file :
Tito_1N2J.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N2J-query.scw
PDB file :
Tito_Scwrl_1N2J.pdb
: