Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTNKQVEISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK---SENIYFYSSNIKEDDIKMKTAKTFLNKLYGGDMKSLVLNFAKNEELNNKEIEELRDILNDISKK
1JGS Chain:A ((28-137))
---SPLDITAAQFKVLCSIRCAACITPVELKKVL----SVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCHQLVGQ--------DLHQELT--KNLTADEVATLEYLLKKVL--
General information:
TITO was launched using:
RESULT:
Template:
1JGS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -38193 for 642 contacts (-59.5/contact) +
2D Compatibility (PS) -11381 + (NN) -5044 + (LL) 816
1D Compatibility (HY) -8000 + (ID) 800
Total energy: -62602.0 ( -97.51 by residue)
QMean score : 0.450
(partial model without unconserved sides chains):
PDB file :
Tito_1JGS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JGS-query.scw
PDB file :
Tito_Scwrl_1JGS.pdb
: