Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRALETIATLREYRKSLKESVGFVPTMGALHRGHQSLIERSLK-ENSHTIVSVFVNPTQFGANEDFSAYPRPLEKDLALCEKSGVNAVFAPKIGEMYPYEAKQRLKLYAPAFLSHSLEGAVRKGHFDGVVQVVLRLFHLTNPTRAYFGKKDAQQLLIIQHLVQDLLLDIEIAPCEIVRDSDNLALSSRNVCLNATERKQALAIPKALEKIQQAIDRGEKACEKLKKLGLEILKNLEVDYLECCNHKLEPLKTIEPANTL--VLVAARVGKTRLLDNLWV
4MUI Chain:A ((34-285))
--------------------VMLVPTMGALHEGHLALVRAAKRVPGSVVVVSIFVNPMQF-----LDAYPRTPDDDLAQLRAEGVEIAFTPTTAAMYPDGLRTTVQ---PGPLAAELEGGPRPTHFAGVLTVVLKLLQIVRPDRVFFGEKDYQQLVLIRQLVADFNLDVAVVGVPTVREADGLAMSSRNRYLDPAQRAAAVALSAALTAAAHAATAGAQAALDAARAVLDAAPGVAVDYLELRDIGLGPM----PLNGSGRLLVAARLGTTRLLDNIAI
General information:
TITO was launched using:
RESULT:
Template:
4MUI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137460 for 1946 contacts (-70.6/contact) +
2D Compatibility (PS) -26193 + (NN) -9323 + (LL) 2864
1D Compatibility (HY) -19600 + (ID) 5200
Total energy: -194912.0 ( -100.16 by residue)
QMean score : 0.460
(partial model without unconserved sides chains):
PDB file :
Tito_4MUI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MUI-query.scw
PDB file :
Tito_Scwrl_4MUI.pdb
: