Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------MEQEVTRL----ISASKQDFEKMNGRDLKRSIFQSEGRVIMAQHLLFASQGLVRGVTNTELLAAFGSDMIMLNT----FNLEDEKSNLGLQGLTLEDLKKRVNIPLGIYLGCPGENKTSENIIYDAAGMLATDEHLLRAKEIGADFIVLGGNPGSGTSIQDIIETTKRARKLLGNDVLIFAGKWEDGIDEKVLG-DPLAKQDAKEVIKQLIDAGADVIDLPAPGSRHGISVRMIQELVQFIHLYKPGTLAMTFLNSSVEGADQDTIRLIALMMKETGADIHAIGDGGFSGCTTPENVMQLSISLKGKPYTYFRMASRNR---- |
| 3VRH Chain:A ((1-309)) | MKCKFCSREAYIKIHYPKMYLCEEHFKEYFERKVSRTIERY-KLLTKDERILVAVSGGKDSAVTAYVLKKLGYNIECLHINLGISGYSEKSEEYAKKQCKLIGAPLHIVRIKEILGYGIGEVKTRRP-PCSYCGLTKRYIMNKFAYDNGFDAIA------TGHNLDDEASFLLNNILHWNTEYLAKGGPILPQQGKFIKKVKPLYEVTEREVVAYALAVGLEYIVEECPYTTLDMKGVLNELEEK-----RPG-TKFNFVRGYLKKKKLFEPKECKI-----------------CRMPSSGDICAFCKFWGLKKEINFKVSSTDEEPFG |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VRH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -17366 for 2191 contacts (-7.9/contact) +
2D Compatibility (PS) -30069 + (NN) -8640 + (LL) 1116
1D Compatibility (HY) -5200 + (ID) 1900
Total energy: -62059.0 ( -28.32 by residue)
QMean score : 0.234
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