Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSIETLFAILEVLGSTPKDFFDEEEHNQKVIYGELEHTFFEDEEKGYRIKWLVPESNEKEMEPVLLEIEANSCFK-SFEPSLSETFAYVLKGEVTVLLGRNEYVAKKGEAIYFHAADEHQIINRSSEHATLILVATESYL
1Y9Q Chain:A ((11-180))
-QIANQLKNLRKSRGLSLDATAQLTGVSKAMLGQIERGESSPTIATLWKIASGLEASFSAFFANDPQLL----SSE-R-SFPD-DLNMKIHTLFPYAADTGLEIFEITLLDHHQQMSSPHALGVIEYIHVLEGIMKVFFDEQWHELQQGEHIRFFSDQPHGYAAVTE-KAVFQNIVAYP--
General information:
TITO was launched using:
RESULT:
Template:
1Y9Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47440 for 1287 contacts (-36.9/contact) +
2D Compatibility (PS) -18153 + (NN) -3537 + (LL) 1392
1D Compatibility (HY) -6400 + (ID) 1950
Total energy: -76088.0 ( -59.12 by residue)
QMean score : 0.314
(partial model without unconserved sides chains):
PDB file :
Tito_1Y9Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y9Q-query.scw
PDB file :
Tito_Scwrl_1Y9Q.pdb
: