Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKKLFRQDENILNSELAEDLPIPRHVAIIMDGNGRWAKKRFLP-RIAGHKEGMDVVKRVTRYANAIGIDVLTLYAFSTENWKRPTDEVDFLMKLPVEFFDSFVPELIEENVRVNVMGYRENLPDHTMRAVEKAIADTAHCTGLTLNFALNYGGRSEIITAAKEAMKELELEGKS----ADDLTEEKLNDHLMSSGLGDPDLLIRTSGELRLSNFMLWQLAYSEFYFTDTHWPDFSKEDFLQAIIEYQNRSRRFGGL
2VG0 Chain:A ((1-227))
---------------------DLPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDELAALIEIITDVVEEIC--APANHWSVRTVGDLGLIGEEPARRLRGAVESTPEVASFHVNVAVGYGGRREIVDAVRALLSKELANGATAEELVDAVTVEGISENLYTSGQPDPDLVIRTSGEQRLSGFLLWQSAYSEMWFTEAHWPAFRHVDFLRALRDYSAR-------
General information:
TITO was launched using:
RESULT:
Template:
2VG0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122209 for 1801 contacts (-67.9/contact) +
2D Compatibility (PS) -24488 + (NN) -11568 + (LL) 1944
1D Compatibility (HY) -16800 + (ID) 3950
Total energy: -177071.0 ( -98.32 by residue)
QMean score : 0.505
(partial model without unconserved sides chains):
PDB file :
Tito_2VG0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VG0-query.scw
PDB file :
Tito_Scwrl_2VG0.pdb
: